Publications (2006)

2160	Angelov A, Liebl W	Insights into extreme thermoacidophily based on genome analysis of Picrophilus torridus and other thermoacidophilic archaea. J BIOTECHNOL, 126(1): 3-10.(2006)
2161	Angelov A, Putryski M, Liebl W	Molecular and biochemical characterisation of alpha-glucosidase and alpha-mannosidase and their clustered genes from the thermoacidophilic archaeon Picrophilus torridus. J BACTERIOL, 188(20): 7123-7131.
2162	Ballschmiter M, Fütterer O, Liebl W	Identification and characterization of a novel intracellular alkaline alpha-amylase from the hyperthermophilic bacterium Thermotoga maritima. APPL ENVIRON MICROB, 72: 2206-2211
2163	Blencke HM, Reif I, Commichau FM, Detsch C, Wacker I, Ludwig H, Stülke J	Regulation of citB expression in Bacillus subtilis: Integration of multiple metabolic signals in the citrate pool and by the general nitrogen regulatory system. ARCH MICROBIOL, 185: 136-146
2164	Bömeke K, Pries R, Korte V, Scholz E, Herzog B, Schulze F, Braus GH	Yeast gcn4p stabilization is initiated by the dissociation of the nuclear pho85p/pcl5p complex. MOL BIOL CELL, 17: 2952-2962.
2165	Braus GH, Sasse C, Krappmann S	Amino acid acquisition, cross-pathway control, and virulence in Aspergillus. MED MYCOL, 44: S91-S94.
2166	Brzuszkiewicz E, Brüggemann H, Liesegang H, Emmerth M, Ölschläger T, Nagy G, Albermann K, Wagner C, Buchrieser C, Emody L, Gottschalk G, Hacker J, Dobrindt U	How to become an uropathogen? Comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains. PROC NATL ACAD SCI. USA 103: 12879-12884.
2167	Chen XH., Vater J, Piel J, Franke P, Scholz R, Schneider K, Koumoutsi A, Hitzeroth G, Grammel N, Strittmatter AW, Gottschalk G, Sussmuth RD, Borriss R	Structural and functional characterization of three polyketide synthase gene clusters in Bacillus amyloliquefaciens FZB 4. J. BACTERIOL. 188: 4024-4036.
2168	Commichau FM, Forchhammer K, Stülke J	Regulatory links between carbon and nitrogen metabolisms. CURR OPINION MICROBIOL, 6: 167-172.
2169	Dickmanns A, Ballschmiter M, Liebl W, Ficner R	Structure of the novel alpha-amylase AmyC from Thermotoga maritima. ACTA CRYSTALLOGR D, 62(Pt 3): 262-270.
2170	Ehrenreich, A	DNA microarray technology for the microbiologist: an overview. Appl. Microbiol. Biotechnol. 73(2): 255-273.
2171	Fischer R, Braus GH	Genomsequenz von Schimmelpilzen bringt Sex ans Licht. Biospektrum, 3: 270-271.
2172	Fricke WF, Seedorf H, Henne A, Krüer M, Liesegang H, Hedderich R, Gottschalk G, Thauer RK	The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H₂ for methane formation and ATP synthesis. J. BACTERIOL. 188: 642-658.
2173	Georg J, Schomacher L, Chong JPJ, Majernik AI, Raabe M, Urlaub H, Müller S, Ciirdaeva E, Kramer W, Fritz HJ	The Methanobacter thermoautotrophicus ExoIII homologue Mth212 is a DNA uridine endonuclease. Nucl Acid Res 34: 5325-5336.
2174	Gohl O, Friedrich A, Hoppert M, Averhoff B	The thin pili of Acinetobacter sp. strain BD413 mediate adhesion to biotic and abiotic surfaces. APPL ENVIRON MICROB, 72: 1394-1401.
2175	Halbedel S, Busse J, Schmidl S, Stülke J	Regulatory protein phosphorylation in Mycoplasma pneumoniae: A PP2C-type phosphatase serves to dephosphorylate HPr(Ser-P). J BIOL CHEM, 281(36): 26253-26259.
2176	Halbedel S, Stülke J	Probing in vivo promoter activities in Mycoplasma pneumoniae: A system for generation of single-copy reporter constructs. APPL ENVIRON MICROB, 72: 1696-1699.
2177	Hildmann C, Wegener D, Riester D, Hempel R, Schober A, Merana J, Giurato L, Guccione S, Nielsen TK, Ficner R, Schwienhorst A	Substrate and inhibitor specificity of class 1 and class 2 histone deacetylases. J BIOTECHNOL, 124(1): 258-270.
2178	Hoi LT, Voigt B, Jürgen B, Ehrenreich A, Gottschalk G, Evers S, Feesche J, Maurer KH, Hecker M, Schweder T	The phosphate-starvation response of Bacillus licheniformis. PROTEOMICS, 6: 3582-3601.
2179	.Irniger S	Preventing Fatal Destruction: Inhibitors of the Anaphase-Promoting Complex in Meiosis. Cell Cycle (Internet-Ausgabe), 5(4): 405-415.
2180	Jendrossek D, Selchow O, Hoppert M	PHB granules at the early stages of formation are localized close to the cytoplasmic membrane in Caryophanon latum. APPL ENVIRON MICROBIOL, doi:10.1128/AEM.01839-06
2181	Jordan S, Junker A, Helmann JD, Mascher T	Regulation of LiaRS-dependent gene expression in Bacillus subtilis: identification of inhibitor proteins, regulator binding sites, and target genes of a conserved cell envelope stress-sensing two-component system. J BACTERIOL, 188(14): 5153-5166.
2182	Kleine J, Liebl W	Comparative characterization of deletion derivatives of the modular xylanase XynA of Thermotoga maritima. EXTREMOPHILES, 10(5): 373-381.
2183	Kleinschmidt M, Schulz R, Braus GH	The yeast CPC2/ASC1 gene is regulated by the transcription factors Fhl1p and Ifh1p. CURR GENET, 49(4): 218-228.
2184	Krappmann S	Tools to study molecular mechanisms of Aspergillus pathogenicity. TRENDS MICROBIOL, 14(8): 356-364.
2185	Krappmann S, Jung N, Medic B, Busch S, Prade RA, Braus GH	The Aspergillus nidulans F-box protein GrrA links SCF activity to meiosis. MOL MICROBIOL, 61(1): 76-88.
2186	Krappmann S, Sasse C, Braus GH	Gene targeting in Aspergillus fumigatus by homologous recombination is facilitated in a nonhomologous end- joining-deficient genetic background. EUKARYOT CELL, 5(1): 212-215.
2187	Liavonchanka A, Hornung E, Feussner I, Rudolph MG	Structure and mechanism of the Propionibacterium acnes polyunsaturated fatty acid isomerase. P NATL ACAD SCI USA, 103(8): 2576-2581.
2189	Lingner, T, Meinicke P	Remote homology detection based on Oligomer Distances. BIOINFORMATICS 22: 2224-2231.
2190	Mascher T, Heintz M, Zähner D, Merai M, Hakenbeck R	The CiaRH system of Streptococcus pneumoniae prevents lysis during stress induced by treatment with cell wall inhibitors and by mutations in pbp2x involved in beta-lactam resistance. J BACTERIOL, 188(5): 1959-1968.

2191	Meinicke P, Brodag T, Fricke WF, Waack S.	P-value based visualization of codon usage data. Algorithms for Molecular Biology, 1: 10.
2192	Mersch B, Glasmachers T, Meinicke P, Igel C	Evolutionary optimization of sequence kernels for detection of bacterial gene starts. Lecture Notes in Computer Science 4132: 827-836.
2193	Morgenstern B, Prohaska SJ, Pöhler D, Stadler PF	Multiple sequence alignment with user-defined anchor points. Algorithms for Molecular Biology, 1: 6.
2194	Morgenstern B, Stadler PF	Editorial New journal: Algorithms for Molecular Biology. Algorithms for Molecular Biology, 1: 1.
2195	Nougayrède JP, Homburg S, Taieb F, Boury M, Brzuszkiewicz E, Gottschalk G, Buchrieser C, Hacker J, Dobrindt U, Oswald E	Escherichia coli induces DNA double strand breaks in eukaryotic cells. SCIENCE 313: 848-851.
2196	Petersen M, Daniel R	Purification and characterization of an extracellular lipase from Clostridium tetanomorphum. WORLD J MICROB BIOT, 22: 363-368.
2197	Pohlmann A, Fricke WF, Reinecke F, Kusian B, Liesegang H, Cramm R, Eitinger T, Ewering C, Pötter M, Schwartz E, Strittmatter A, Voß I, Gottschalk G, Steinbüchel A, Friedrich B, Bowien B	Genome sequence of the bioplastic-producing "Knallgas" bacterium Ralstonia eutropha H16. NAT BIOTECHNOL, 24(10): 1257-1262.
2198	Prechtel AT, Chemnitz J, Schirmer S, Ehlers C, Langbein-Detsch I, Stülke J, Dabauvalle MC, Kehlenbach RH, Hauber J	Expression of CD83 is regulated by HuR via a novel cis-active coding region RNA element. J BIOL CHEM, 281: 10912-10925.
2199	Roeser D, Preusser-Kunze A, Schmidt B, Gasow K, Wittmann JG, Dierks T, von Figura K, Rudolph MG	A general binding mechanism for all human sulfatases by the formylglycine-generating enzyme. P NATL ACAD SCI USA, 103(1): 81-86.
2200	Rudolph MG, Heissmann R, Wittmann JG, Klostermeier D	Crystal Structure and Nucleotide Binding of the Thermus thermophilus RNA Helicase Hera N-terminal Domain. J MOL BIOL, 361: 731-743
2201	Rudolph MG, Stanfield RL, Wilson IA	How TCRs bind MHCs, peptides, and coreceptors. ANNU REV IMMUNOL, 24: 419-466.
2202	Schilling O, Frick O, Herzberg C, Ehrenreich A, Heinzle E, Wittmann C, Stülke J	Transcriptional and metabolic responses of Bacillus subtilis to the availability of organic acids: Transcription regulation is important but not sufficient to account for metabolic adaptation. Appl. Environ. Microbiol. Epub ahead of print 22. November 2006 (online)

2203	Schultz A K, Zhang M, Leitner T, Kuiken C, Korber B, Morgenstern B, Stanke M	A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes. BMC BIOINFORMATICS, 7: 265.
2204	Schwarz S, Waschkowitz T, Daniel R	Enhancement of gene detection frequencies by combining DNA-based stable-isotope probing with the construction of metagenomic DNA libraries. WORLD J MICROB BIOT, 22: 363-368.
2205	Seiler S, Vogt N, Ziv C, Gorovits R, Yarden O	The STE20/Germinal Center Kinase POD6 Interacts with the NDR Kinase COT1 and Is Involved in Polar Tip Extension in Neurospora crassa. MOL BIOL CELL, 17: 4080-4092.
2206	Stanke M, Keller O, Gunduz I, Hayes A, Waack S, Morgenstern B	AUGUSTUS: ab initio prediction of alternative transcripts. NUCLEIC ACIDS RES, 34: W435 - W439.
2207	Stanke M, Schöffmann O, Morgenstern B, Waack S	Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources. BMC BIOINFORMATICS, 7: 62.
2208	Stanke M, Tzvetkova A, Morgenstern B	AUGUSTUS+ at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome. Genome Biol (Internet-Ausgabe), 7: S11.

2209	Steinbüchel, A, Bowien B, Friedrich B, Heumann H	Ralstonia eutropha Stamm H16 – eine potentielle Zellfabrik -. GenomXPress, 04: 13-14.
2210	Strittmatter A	Genomanalyse in Deutschland – Eine Forschungsrichtung mit Zukunft? Laborwelt 2 /Vol. 7: 4-5.
2211	Strittmatter AW, Fischer C, Kleinschmidt M, Braus GH	FLO11 mediated filamentous growth of the yeast Saccharomyces cerevisiae depends on the expression of the ribosomal RPS26 genes. MOL GENET GENOMICS, 276 (2): 113-125.
2212	Tech M, Meinicke P	An unsupervised classification scheme for improving predictions of prokaryotic TIS. BMC BIOINFORMATICS, 7: 121.
2213	Tech M, Morgenstern B, Meinicke P	TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites. NUCLEIC ACIDS RES, 34: W588 - W590.
2214	Török Á Müller C, Hoppert M, Hüpers A, Siegesmund S, Weiss T	Differences in texture, physical properties and microbiology of weathering crust and host rock: a case study of the porous limestone of Budapest (Hungary). GEOL SOC SPEC PUBL 271: 261-276.
2215	Veit K, Ehlers C, Ehrenreich A, Salmon K, Hovey R, Gunsalus RP, Deppenmeier U, Schmitz RA	Global transcriptional analysis of Methanosarcina mazei strain Gö1 under different nitrogen availabilities. MOL GENET GENOMICS, 276: 41-55.

2216	Voigt B, Schweder T, Sibbald MJ, Albrecht D, Ehrenreich A, Bernhardt J, Feesche J, Maurer KH, Gottschalk G, van Dijl JM, Hecker M	The extracellular proteome of Bacillus licheniformis grown in different media and under different nutrient starvation conditions. PROTEOMICS 6: 268-281.
2217	Waack S, Keller O, Asper R, Brodag T, Damm C, Fricke WF, Surovcik K, Meinicke P, Merkl R	Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. BMC BIOINFORMATICS, 7: 142.
2218	Wecke T., Veith B., Ehrenreich A., Mascher T	Cell envelope stress response in Bacillus licheniformis: integrating comparative genomics, transcriptional profiling, and regulon mining to decipher a complex regulatory network. J. Bacteriol. 188(21): 7500-7511.
2219	Zhang M, Schultz A K, Calef C, Kuiken C, Leitner T, Korber B, Morgenstern B, Stanke M	jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1. NUCLEIC ACIDS RES, 34: W463 - W465.
2220	Ehrenreich A, Gottschalk G, Brüggemann H	Genomics of pathogenic clostridia and bacilli. In: Wiley VCH (Hg.) Pathogenomics: Genome analysis of pathogenic microbes. Wiley-VCH Verlag, Weinheim, 257-280.
2221	Hoppert M, König S	The succession of biofilms on building stone and its possible impact on biogenic weathering. In: Fort R, Alvares de Buergo M, Gomez-Heras M, Vazguez-Calco C (Hg.) Heritage, Weathering and Conservation, Vol. 1. Martin Dunitz - Taylor and Francis Group Verlag, London, 311-315.
2222	Mayer F, Wheatley D, Hoppert M	Some Properties of interfacial water: Determinants for cell architecture and function? In: G Pollack et al. (Hg. ) Water and the Cell. Springer, Dordrecht (NL), 253-271.
2223	Mayer F.	Cytoskeletal elements in bacteria Mycoplasma pneumoniae, Thermoanaerobacterium sp., and Escherichia coli as revealed by electron microscopy. J Mol Microbiol Biotechnol. 11(3-5): 228-243.
2224	Bömeke K	Stability regulation of Gcn4p in Saccharomyces cerevisiae. Universität Göttingen, Dissertation. (Betreuer: Prof. Dr. Gerhard Braus).
2225	Hoffmeister M	Untersuchungen zur Physiologie des Essigsäurebakteriums Gluconobacter oxydans 621H. Universität Göttingen, Dissertation. (Betreuer: Dr. Armin Ehrenreich).
2226	Waschkowitz T	Identifizierung und Charakterisierung von Genen und korrespondierenden Genprodukten aus Metagenombanken, die Butanol-Dehydrogenase-Aktivität oder proteolytische Aktivität vermitteln. Universität Göttingen, Dissertation. (Betreuer: Prof. Dr. Wolfgang Liebl).

2227	Zhenlian Zing Z	Directed evolution of novel properties starting from HisF of Thermotoga maritima as a structural scaffold. Universität Götitngen, Dissertation. (Betreuer: Prof. Dr. Hans-Joachim Fritz).
2228	Panico E.R.	Saccharomyces cerevisiae DNA helicases Mph1, Srs2 and Sgs1 collaborate for the reinitation of stalled or collapsed replication fork. Universität Göttingen, Dissertation. (Betreuer: Priv.-Doz. Dr. Wilfried Kramer).
2229	Naumann P.-T.	Versuche zur Strukturaufklärung bakterieller Thiouridin Synthetasen. Universität Göttingen, Dissertation. (Betreuer: Prof. Dr. Ralf Ficner).