Publications (2004)

1996

Hoppert, M.

Microscopic techniques in biotechnology
Wiley-VCH, Weinheim, pp. 330, 2003

1997

Bulieris, P.V.
Behrens, S.
Holst, O.
Kleinschmidt, J.H

Folding and insertion of the outer membrane protein OmpA is assisted by the chaperone Skp and by lipopolysaccharide
J. Biol. Chem. 278, 9092-9099 (2003)

1998

Braus, G.H.
Pries, R.
Düvel, K.
Valerius, O.

Molecular biology of fungal amino acid biosynthesis regulation
In: The Mycota II, Genetics and Biotechnology (U. Kück, ed.), pp. 239-269, Chapter 13, Springer-Verlag Berlin, Heidelberg, 2004

1999

Helmstaedt, K.
Heinrich, G.
Merkl, R.
Braus, G.H.

Chorismate mutase of Thermus thermophilus is a monofunctional AroH class enzyme inhibited by tyrosine
Arch. Microbiol. 181, 195-203 (2004)

2000

Borkovich, K.A.
et al.
Seiler, S.

Lessons from the genome sequence of Neurospora crassa: Tracing the path from genomic blueprint to multicellular organism
Mol. Biol. Rev. 68, 1-108 (2004)

2001

Veith, B.
Zverlov, V.V.
Lunina, N.A.
Berezina, O.V.
Raasch, C.
Velikodvorskaya, G.A.
Liebl, W.

Comparative analysis of the recombinant –glucosidases from the Thermotoga neapolitana and Thermotoga maritima maltodextrin utilization gene clusters
Biocatal. Biotransfor. 21, 147-158 (2003)

2002

Pompejus, M.
Klopprogge, C.
Zelder, O.
Liebl, W.

Verfahren zur Herstellung eines Marker-freien mutierten Zielorganismus sowie dafür geeignete Plasmidvektoren
Patentanmeldung  (2002)

2003

Bertoldo, C.
Armbrecht, M.
Becker, F.
Schäfer, T.
Antranikian, G.
Liebl, W.

Cloning, sequencing and characterization of thermoalkalistable pullulanase type I from Anaerobranca gottschalkii
Appl. Environ. Microbiol. 70, 3407-3416 (2004)

2004

Stülke, J.
Schmalisch, M.

The bacterial phosphotransferase system: A perfect link of sugar transport and signal transduction
Topics Curr. Genet. 9, 179-205 (2004)

2005

Merzbacher, M.
Detsch, C.
Hillen, W.
Stülke, J.

Mycoplasma pneumoniae HPr kinase/phosphorylase: assigning functional roles to the P-loop and the HPrK/P signature sequence motif
Eur. J. Biochem. 271, 367-374 (2004)

2006

Schilling, O.
Langbein, I.
Müller, M.
Schmalisch, M.H.
Stülke, J.

A protein-dependent riboswitch controlling ptsGHI operon expression in Bacillus subtilis: RNA structure rather than sequence provides interaction specificity
Nucl. Acid Res. 32, 2853-2864 (2004)

2007

Pries, R.
Bömeke, K.
Draht, O.
Künzler, M.
Braus, G.H.

Nuclear import of yeast Gcn4p requires karyopherins Srp1p and Kap95p
Mol. Gen. Genomics 271, 257-266 (2004)

2008

Krappmann, S.
Bignell, E.M.
Reichard, U.
Rogers, T.
Haynes, K.
Braus, G.H

The Aspergillus fumigatus transcriptional activator CpcA contributes significantly to the virulence of this fungal pathogen
Mol. Microbiol. 52, 785-799 (2004)

2009

König, V.
Pfeil, A.
Braus, G.H.
Schneider, T.R.

Substrate and metal complexes of 3-Deoxy-D-arabino-heptulosonate-7-phosphate synthase from Saccharomyces cerevisiae provide new insights into the catalytic mechanism
J. Mol. Biol. 337, 675-690 (2004)

2010

Daniel, R.

The soil metagenome - a rich resource for the discovery of novel natural products
Curr. Opinion Biotechnol. 15, 199-204 (2004)

2011

Schmitz, R.A.
Achebach, S.
Unden, G.

Analysis of fumarate nitrate reductase regulator as an oxygen sensor in Escherichia coli
Methods in Enzymology 381, 628-644 (2004)

2012

Fütterer, O.
Angelov, A.
Liesegang, H.
Gottschalk, G.
Schleper, C.
Schepers, B.
Dock, C.
Antranikian, G.
Liebl, W.

Genome sequence of Picrophilus torridus and its implications for life around pH 0
Proc.Natl.Acad.Sci. 101, 9091-9096 (2004)

2013

Liebl, W.

Genomics taken to the extreme
Nature Biotechnol. 22, 524-525 (2004)

2014

Streit, W.R.
Schmitz, R.A.

Metagenomics - the key to the uncultured microbes
Curr. Opinion Microbiol. 7, 492-498 (2004)

2015

Stips, J.
Thummer, R.
Neumann, M.
Schmitz, R.A.

GlnK effects complex formation between NifA and NifL in Klebsiella pneumoniae
Eur. J. Biochem. 271, 3379-3388 (2004)

2016

Streit, W.R.
Schmitz, R.A.
Perret, X.
Staehelin, C.
Deakin, W.J.
Raasch, C.
Liesegang, H.
Broughton, W.J.

An evolutionary hot spot: the pNGR234b replicon of Rhizobium sp. Strain NGR234
J. Bacteriol. 186, 535-542

2017

Pötter, M.
Müller, H.
Reinecke, F.
Wieczorek, R.
Fricke, F.
Bowien, B.
Friedrich, B.
Steinbüchel, A.

The complex structure of polyhydroxybutyrate (PHB) granules: four orthologous and paralogous phasins occur in Ralstonia eutropha
Microbiol. 150, 2301-2311 (2004)

2018

Mayer, F.
Gottschalk, G.

The bacterial cytoskeleton and its putative role in membrane vesicle formation observed in a gram-positive bacterium producing starch-degrading enzymes
J. Mol. Microbiol. Biotechnol. 6, 127-132 (2003)

2019

Hoppert, M.
Reimer, R.
Kemmling, A.
Schröder, A.
Günzl, B.
Heinken, T.

Sructure and reactivity aof a biological crust from a xeric sandy soil in Central Europe

Geomicrobiol. J. 21, 183-191 (2004)

2020

Mlejnek, K.
Seiffert, B.
Demberg, T.
Kämper, M.
Hoppert, M.

Temperature optima of enzyme-catalyzed reactions in microemulsion systems

Appl. Microbiol. Biotechnol. 64, 473-480 (2004)

2021

Kämper, M.
Vetterkind, S.
Berker, R.
Hoppert, M.

Methods for in-situ detection and characterization of extracellular polymers in biofilms by electron microscopy
J. Microbiol. Meth. 57, 55-64 (2004)

2022

Hoppert, M.
Flies, C.
Pohl, W.
Günzl, B.
Schneider, J.

Colonization strategies of lithobiontic microorganisms on carbonate rocks
Environ. Geol. 46, 421-428 (2004)

2023

Kemmling, A.
Kämper, M.
Flies, C.
Schieweck, O.
Hoppert, M.

Biofilms and extracellular matrices on geomaterials
Environ. Geol. 46, 429-435 (2004)

2024

Eiffert, H.
Karsten, A.
Schlott, T.
Ohlenbusch, A.
Laskawi, R.
Hoppert, M.
Christen, H.J.

Acute peripheral facial palsy in Lyme-Disease - a distal neuritis at the infection site
Neuropediatrics 35, 267-273 (2004)

2025

Ehlers, C.

Funtional analysis of the Gluk₁-protein of Methanosarcina mazei strain Gö1: Aspects of nitrogen regulation
Dissertation, Univers. Göttingen, 2004

2026

Streit, W.R.
Daniel, R.
Jaeger, K.-E.

Prospecting for biocatalysts and drugs in the genomes of non-cultured microorganisms
Curr. Opinion Microbiol. 15, 285-290 (2004)

2027

Sun, J.
Daniel, R.
Wagner-Döbler, I.
Zeng, A-P.

Is autoinducer-2 a universal signal for interspecies communication: a comparative genomic and phylogenetic analysis of the synthesis and signal transduction pathways
BMC Evol. Biol. 4 (36) 1-11 (2004)

2028

Mascher, T.
Zimmer, S.L.
Smith, T.-A.
Helmann, J.D.

Antibiotic-inducible promoter regulated by the cell envelope stress-sensing two-component system LiaRS of Bacillus subtilis
Antimicrobiol. Agents Chemother. 48, 2888-2896 (2004)

2029

Görke, B.
Fraysse, L.
Galinier, A.

Drastic differences in Crh and HPr synthesis levels reflect their different impacts on catabolite repression in Bacillus subtilis
J. Bacteriol. 186, 2992-2995 (2004)

2030

Halbedel, S.
Hames, C.
Stülke, J.

In vivo activity of enzymatic and regulatory components of the phosphoenolpyruvate: sugar phosphotransferase system in Mycoplasma pneumoniae
J. Bacteriol. 186, 7936-7943 (2004)

2031

Schmalisch, M.

Regulation der Glucoseaufnahme und -verwertung in Bacillus subtilis durch reversible Proteinphosphory-lierungen
Dissertation, Univers. Göttingen, 2004

2032

Blencke, H.M.

Die Regulation der zentralen Stoffwechselwege in Bacillus subtilis
Dissertation, Univers. Göttingen, 2004

2033

Schürer, K.A.
Rudolph, C.
Ulrich, H.D.
Kramer, W.

Yeast MPH1 gene functions in an error-free DNA damage bypass pathway that requires genes from homologous recombination, but not from postreplicative repair
Genetics 166, 1673-1686 (2004)

2034

Henne, A.
Brüggemann, H.
Raasch, C.
Wiezer, A.
Hartsch, T.
Liesegang, H.
Johann, A.
Lienard, T.
Gohl, O.
Martinez-Arias,R.
Jacobi, C.
Starkuviene, V.
Schlenczeck, S.
Dencker, S.
Huber, R.
Klenk, H.-P.
Kramer, W.
Merkl, R.
Gottschalk, G.
Fritz, H.-J.

The genome sequence of the extreme thermophile Thermus thermophilus
Nature Biotechnol. 22, 547-553 (2004)

2035

Brückner, S.
Köhler, T.
Braus, G.H.
Heise, B.
Bolte, M.
Mösch, H.-U.

Differential regulation of Tec1 by Fus3 and Kss1 confers signaling-specificity in yeast development
Curr. Genetics, in press (2004)

2036

Daniel, R.

Die mikrobielle Diversität als Quelle für neuartige Biokatalysatoren: Konstruktion und Durchmusterung von Metagenombanken
Biospektrum 9, 605-606 (2003)

2037

Daniel, R.
Streit, W.R.

Metagenomik, mehr als nur die Suche nach neuen Biokatalysatoren und Wirkstoffen
Biospektrum 10, 39-41 (2004)

2038

Becker, S.
Schmoldt, H.-U.
Adams, T.M.
Wilhelm, S.
Kolmar, H.

Ultra-high-throughput screening based on cell-surface display and fluorescence-activated cell sorting for the identification of novel biocatalysts
Curr. Opinion Microbiol. 15, 323-329 (2004)

2039

Adams, T.M.
Kolmar, H.

Enzyme engineering by microbial cell surface display
In: Enzyme Functionality. Design, Engineering, and Screening (Svendsen, A., ed.), pp. 599-616, chapter 27 (2004)

2040

Kolmar, H.

DegP or protease Do
In: Handbook of Proteolytic Enzymes, 2^nd. Ed., pp. 1472-1476, chapter 448. Elsevier Ltd. (2004)

2041

Avrutina, O.
Schmoldt, H-U.
Kolmar, H.
Diederichsen, U.

Fmoc-assisted synthesis of a 29-residue cystine-knot trypsin inhibitor containing a guaninyl amino acid at the P1-position
Eur. J. Org. Chem. 4931-4935 (2004)

2042

Adams, T.M.
Schmoldt, H.-U.
Kolmar, H.

FACS screening of combinatorial peptide and protein libraries displayed on the surface of Escherichia coli cells
In: Evolutionary Methods in Biotechnology - Clever Tricks for Directed Evolution (Brakmann, S., Schwienhorst, A., eds.), Wiley-VCH, 2004

2043

Krause, S.
Würdemann, D.
Wentzel, A.
Christmann, A.
Fehr, H.
Kolmar, H.
Friedrich, K.

Bacteria displaying interleukin-4 mutants stimulate mammalian cells and reflect the biological activities of variant soluble cytokines
ChemBioChem 5, 804-810 (2004)

2044

Einsle, O.
Kroneck, P.M.H.

Structural basis of denitrification
Biol. Chem. 385, 875-883 (2004)

2045

Messerschmidt, A.
Niessen, H.
Abt, D.
Einsle, O.
Schink, B.
Kroneck, P.M.H

Crystal structure of pyrogallol-phloroglucinol transhydroxylase, a Mo enzyme capable of intermolecular hydroxyl transfer between phenols
Proc. Natl. Acad. Sci. USA 101, 11571-11576 (2004)

2046

Simon, J.
Einsle, O.
Kroneck, P.M.H.
Zumft, W.G.

The unprecedented nos gene cluster of Wolinella succinogenes encodes a novel respiratory electron transfer patway to cytochrome c nitrous oxide reductase
FEBS Lett. 569, 7-12 (2004)

2047

Wittmann, J.G.
Rudolph, M.G.

Crystal structure of Rab9 complexed to GDP reveals a dimer with an active conformation of switch II
FEBS Lett. 568, 23-29 (2004)

2048

Rudolph, M.G.
Wingren, C.
Crowley, M.P.
Chien, Y.-H.
Wilson, I.A.

Combined pseudo-merohedral twinning, non-crystallographic symmetry and pseudo-translation in a monoclinic crystal form of the gd T cell ligand T10
Acta Cryst. D60, 656-664 (2004)

2049

Wittmann, J.G.
Rudolph, M.G.

Purification, crystallization and preliminary X-ray analysis of the GTP-binding protein Rab9 implicated in endosome-to-TGN vesicle trafficking
Acta Cryst. D60, 580-582 (2004)

2050

Rudolph, M.G.
Shen, L.Q.
Lamontagne, S.A.
Luz, J.G.
Delaney, J.R.
Ge, Q.
Cho, B.K.
Palliser, D.
McKinley, C.A.
Chen, J.
Wilson, I.A.
Eisen, H.N.

A peptide that antagonizes T cell receptor-mediated reactions with both syngeneic and allogeneic agonists: functional and structural aspects
J. Immunol. 172, 2994-3002 (2004)

2051

Strasser, A.
Dickmanns, A.
Schmidt, U.
Penka, E.
Urlaub, H.
Sekine, R.
Lührmann, R.
Ficner, R.

Purification, crystallization and preliminary crystallographic data of the m₃G cap-binding domain of human snRNP import factor snuportin1

2052

Steinke, C.

Präparation und röntgenkristallographische Untersuchung an archaebakteriellen Box C/D sRNPs und einer neuartigen Glukosyltransferase aus Thermotoga maritima MSB8
Dissertation, Univers. Göttingen (2004)

2053

Bolte, M.

Regulation of the anaphase promoting complex (APC/C) in the mitotic and meiotic cell cycle of Saccharomyces cerevisiae

2054

Dieckhoff, P.

Protein modification and degradation in the cell cycle of the yeast Saacharomyces cerevisiae

2055

Hoster, F.
Schmitz, J.E.
Daniel, R.

Enrichment of chitinolytic microorganisms: isolation and characterization of a chitinase exhibiting antifungal activity against phytopathogenic fungi from a novel Streptomyces strain
Appl. Microbiol. Biotechnol. 66, 434-442 (2005)

2056

Meinicke, P.
Tech, M.
Morgenstern, B.
Merkl, R.

Oligo Kernels for datamining on biological sequences: A case study on prokaryotic translation initiation sites

BMC Bioinformatics 5, 169 (2004)

2057

Morgenstern, B.
Prohaska, S.J.
Werner, N.
Weyer-Menkhoff, J.
Schneider, I.
Subramanian, A.R.
Stadler, P.F.

Multiple sequence alignment with user-defined constraints
Lecture Notes in Informatics P-53, 25-36 (2004)

2058

Schmollinger, M.
Nieselt, K.
Kaufmann, M.
Morgenstern, B.

DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors

BMC Bioinformatics 5, 128 (2004)

2059

Meinicke, P.
Hermann, T.
Bekel, H.
Müller, H.M.
Weiss, S.
Ritter, H.

Identification of Discriminative Features in EEG
Intelligent Data Analysis, 8(1), 97-107 (2004)

2060

Kaper, M.
Meinicke, P.
Grossekathoefer, U.
Lingner, T.
Ritter, H.

BCI competition 2003 - Data set IIb: Support vector machines for the P300 speller paradigm
IEEE Transactions on Biomedical Engineering 51 (6), 1073-1076 (2004)

2061

Taher, L.
Rinner, O.
Garg, S.
Sczyrba, A.
Morgenstern, B.

AgenDA: Gene Prediction by Cross-Species Sequence Comparison
Nucl. Acids Res. 32, W305-W308 (2004)

2062

Stanke, M.
Steinkamp, R.
Waack, S.
Morgenstern, B.

AUGUSTUS: a web server for gene finding in eukaryotes
Nucl. Acids Res. 32, W309-W312 (2004)

2063

Morgenstern, B.

DIALIGN: Multiple DNA and protein sequence alignment at BiBiServ
Nucl. Acids Res. 32, W33-W36 (2004)

2064

Brudno, M.
Steinkamp, R.
Morgenstern, B.

The CHAOS/DIALIGN WWW server or Multiple Alignment of Genomic Sequences
Nucl. Acids Res. 32, W41-W44 (2004)

2065

Stanke, M.

Sequential selection of random vectors under a sum constraint
J. of Appl. Probability 41, 131-146 (2004)

2066

Morgenstern, B.

The DIALIGN multiple alignment program: recent developments and applications.
Cladistics 20, 89-90 (2004)

2067

Morgenstern, B.

Gene structure prediction by genomic sequence alignment
In: Genetics, Genomics, Proteomics and Bioinformatics John Wiley & Sons, to appear

2068

Hacker, J.
Hochhut, B.
Middendorf, B.
Schneider, G.
Buchrieser, C.
Gottschalk, G.
Dobrindt, U.

Pathogenomics of mobile genetic elements of toxigenic bacteria.
Int. J. Med. Microbiol. 293, 453-461. Review. (2004)

2069

Voigt, B.
Schweder, T.
Becher, D.
Ehrenreich, A.
Gottschalk, G.
Feesche, J.
Maurer, K.H.
Hecker, M.

A proteomic view of cell physiology of Bacillus licheniformis
Proteomics 4, 1465-1490 (2004)

2070

Brüggemann, H.
Henne, A.
Hoster, F.
Liesegang, H.
Wiezer, A.
Strittmatter, A.
Hujer, S.
Dürre, P.
Gottschalk, G.

The complete genome sequence of Propionibacterium acnes, a commensal of human skin
Science 305, 671-673 (2004)

2071

Grozdanov, L.
Raasch, C.
Schulze, J.
Sonnenborn, U.
Gottschalk, G.
Hacker, J.
Dobrindt, U.

Analysis of the genome structure of the nonpathogenic probiotic Escherichia coli strain Nissle 1917
J. Bacteriol. , 5432-5441 (2004)

2072

Brüggemann, H.
Bauer, R.
Gottschalk, G.

Characterization of a heme oxygenase of Clostridium tetani and its possible role in oxygen tolerance
Arch. Microbiol. 182, 259-263. Epub Aug 31 (2004)

2073

Veith, B.
Herzberg, C.
Steckel, S.
Feesche, J.
Maurer, K.H.
Ehrenreich, P.
Bäumer, S.
Henne, A.
Liesegang, H.
Merkl, R.
Ehrenreich, A.
Gottschalk, G.

The complete genome sequence of Bacillus licheniformis DSM 13, an organism with great industrial potential
J. Mol. Microbiol. Biotechnol. 7, 204-211 (2004)

2074

Schneider, G.
Dobrindt, U.
Brüggemann, H.
Nagy, G.
Janke, B.
Blum-Oehler, G.
Buchrieser, C.
Gottschalk, G.
Emody, L.
Hacker, J.

The pathogenicity island associated K15 capsule determinant exhibits a novel genetic structure and correlates with virulence in uropathogenic Escherichia coli strain 536
Infect. Immun. 72, 5993-6001 (2004)

2075

Cava, F.
De Pedro, M.A.
Schwarz, H.
Henne, A.
Berenguer, J.

Binding to pyruvylated compounds as an ancestral mechanism to anchor the outer envelope in primitive bacteria
Mol. Microbiol. 52, 677-690 (2004)

Cazalet, C.
Rusniok, C.
Brüggemann, H.
Zidane, N.
Magnier, A.
Ma, L.
Tichit, M.
Jarraud, S.
Bouchier, C.
Vandenesch, F.
Kunst, F.
Etienne, J.
Glaser, P.
Buchrieser, C.

2082

Brakmann, S.
Schwienhorst, A.

The Method Repertoire of Directed Evolution - A Laboratory Manual, Wiley-VCH, Weinheim, (2004)