Publications (2003)

1915

Bowien, B.
Dürre, P.

Nucleic acids. Isolation methods American Sci. Publ., USA, 2003

1916

Krappmann, S.
Braus, G.H.

Deletion of Aspergillus nidulans aroC using a novel blaster module that combines ET cloning and marker rescue

Mol. Gen. Genomics 268, 675-683 (2003)

1917

Hartmann, M.
Schneider, T.R.
Pfeil, A.
Heinrich, G.
Lipscomb, W.N.
Braus, G.H.

Evolution of feedback-inhibited b/a barrel isoenzymes by gene duplication and a single mutation

PNAS 100, 862-867 (2003)

1918

Daniel, R.
Schmitz, R.A.
Streit, W.

Aus Wattenmeer und Wüstensand

Georgia Augusta „Gene und Grenzen" 1, 111-115 (2002)

1919

Hoppert, M.
Berker, R.
Flies, C.
Kämper, M.
Pohl, W.
Schneider, J.
Ströbel, S.

Biofilms and their extracellular environment on geomaterials: methods for investigation down to nanometre scale

In: Natural Stone, Weathering Phenomena, Conservation Strategies and Case Studies (Siegesmund, S., Weiss, T., Vollbrecht, A., ed.), Vol. 205, pp. 207-215. Geological Society London, 2002

1920

Huster, D.
Hoppert, M.
Lutsenko, S.
Zinke, J.
Lehmann, C.
Mössner, J.
Berr, F.
Caca, K.

Defective cellular localization of mutant ATP7B in Wilson’s disease patients and hepatoma cell lines

Gastroenterology 124, 335-345 (2003)

1921

Knietsch, A.
Waschkowitz, T.
Bowien, S.
Henne, A.
Daniel, R.

Construction and screening of metagenomic libraries derived from enrichment cultures: generation of a gene bank for genes conferring alcohol oxidoreductase activity on Escherichia coli

Appl. Environ. Microbiol. 69, 1408-1416 (2003)

1922

Kollas, A.-K.
Duin, E.V.
Eberl, M.
Altincicek, B.
Hintz, M.
Reichenberg, A.
Henschker, D.
Henne, A.
Steinbrecher, I.
Ostrovsky, D.N.
Hedderich, R.
Beck, E.
Jomaa, H.
Wiesner, J.

Functional characterization of GcpE, an essential enzyme of the non-mevalonate pathway of isoprenoid biosynthesis

FEBS Letters 532, 432-436 (2002)

1923

Pries, R.

Localization and stability of the transcriptional activator Gcn4p of Saccharomyces cerevisiae

Dissertation, Univers. Göttingen, 2003

1924

Knietsch, A.
Waschkowitz, T.
Bowien, S.
Henne, A.
Daniel, R.

Metagenomes of complex microbial consortia derived from different soils as sources for novel genes conferring formation of carbonyls from short-chain polyols on Escherichia coli

J. Mol. Microbiol. Biotechnol. 5, 46-56 (2003)

1925

Grabbe, R.
Schmitz, R.A.

Oxygen control of nif gene expression in Klebsiella pneumoniae depends on NifL reduction at the cytoplasmic membrane by electrons derived from the reduced quinone pool

Eur. J. Biochem. 270, 1555-1566 (2003)

1926

Schlegel, H.G.

The diversitxy of energy sources of microorganisms

In: Biochemistry and Physiology of anaerobic bacteria (Ljungdahl, L.G., Adams, M.W., Barton, L.L., Ferry, J.G., Johnson, M.K. (eds.), pp. 11-19, New York, Springer-Verlag, 2003

1927

Park, J.E.
Young, K.E.
Schlegel, H.G.
Rhie, H.G.
Lee, H.S.

Conjugative plasmid mediated inducible nickel resistance in Hafnia alvei 5-5

Int. Microbiol. 6, 57-64 (2003)

1928

Schmitz, R.A.
Klopprogge, K.
Grabbe, R.
Stips, J.

Regulation of nitrogen fixation in Klebsiella pneumoniae and Azotobacter vinelandii: NifL, transducing two environmental signals to the nif transcriptional activator NifA

In: Regulatory networks in Prokaryotes (Dürre, P. Friedrich, B., eds.), pp. 65-72, Horizon Scientific Press, Norfolk, 2003

1929

Knietsch, A.
Bowien, S.
Whited, G.
Gottschalk, G.
Daniel, R.

Identification and characterization of coenzyme B₁₂-dependent glycerol dehydratase- and diol dehydratase-encoding genes from metanogenic DNA libraries derived from enrichment cultures

Appl. Environ. Microbiol. 69, 3048-3060 (2003)

1930

Meyer, W.J.
Wiebe, M.G.

Enzyme production by the nematode-trapping fungus, Duddingtonia flagrans

Biotechnol. Letters 25, 791-795 (2003)

1931

Bolte, M.
Dieckhoff, P.
Kraus, C.
Braus, G.H.
Irniger, S.

Synergistic inhibition of APC/C by glucose and activated Ras proteins can be mediated by each of the Tpk1-3 proteins in Saccharomyces cerevisiae

Microbiol. 149, 1205-1216 (2003)

1932

Busch, S.
Eckert, S.E.
Krappmann, S.
Braus, G.H.

The COP9 signalosome is an essential regulator of development in the filamentous fungus Aspergillus nidulans

Mol. Microbiol. 49, 717-730 (2003)

1933

Düvel, K.
Pries, R.
Braus, G.H.

Polyadenylation of rRNA- and tRNA-based yeast transcripts cleaved by internal ribozyme activity

Curr. Genet. 43, 255-262 (2003)

1934

Reidt, U.
Wahl, M.C.
Fasshauer, D.
Horowitz, D.S.
Lührmann, R.
Ficner, R.

Crystal structure of a complex between human spliceosomal cyclophilin H and a U4/U6 snRNP-60K peptide

J. Mol. Biol. 331, 45-56 (2003)

1935

Stecker, C.
Johann, A.
Herzberg, C.
Averhoff, B.
Gottschalk, G.

Complete nucleotide sequence and genetic organization of the 210-kilobase linear plasmid of Rhodococcus erythropolis BD2

J. Bacteriol. 185, 5269-5274 (2003)

1936

Schwartz, E.
Henne, A.
Cramm, R.
Eitinger, T.
Friedrich, B.
Gottschalk, G.

Complete nucleotide sequence of pHG1: a Ralstonia eutropha H16 megaplasmid encoding key enzymes of H₂-based lithoautotrophy and anaerobiosis

J. Mol. Biol. 332, 369-383 (2003)

1937

Irniger. S.
Braus, G.H.

Controlling transcription by destruction: the regulation of yeast Gcn4p stability

Curr. Genet. 44, 8-18 (2003)

1938

Seiler, S.
Plamann, M.

The genetic basis of cellular morphogenesis in the filamentous fungus Neurospora crassa

Mol. Biol. Cell 14, 4352-4364 (2003)

1939

Galagan, J.E.
et al.
Seiler, S.

The genome sequence of the filamentous fungus Neurospora crassa

Nature 422, 859-868 (2003)

1940

Schmitz, R.A.

Regulation der Stickstofffixierung in Klebsiella pneumoniae: NifL und seine Teamkollegen

BIOspektrum 8, 734-735

1941

Schmeisser, C.
Stöckigt, C.
Raasch, C.
Wingender, J.
Timmis, K.N.
Wenderoth, D.F.
Flemming, H.-C.
Liesegang, H.
Schmitz, R.A.
Jaeger, K.-E.
Streit, W.R.

Exploiting the metagenome of drinking water biofilms

Appl. Environ. Microbiol. 69 (12) (2003)

1942

Rudolph, M.
Kraus, I.
Dickmanns, A.
Eickmann, M.
Garten, W.
Ficner, F.

Crystal structure of the Borna disease virus nuceloprotein

Structure 11, 1219-1226 (2003)

1943

Ingelfinger, D.
Göthel, S.F.
Marahiel, M.A.
Reidt, U.
Ficner, R.
Lührmann, R.
Achsel, T.

Two protein-protein interaction sites on the spliceosome-associated human cyclophilin CypH

Nucl. Acids Res. 31, 4791-4796 (2003)

1944

Behrens, S.

Periplasmic chaperones - new structural and functional insights

Structure 10, 1469-1471 (2003)

1945

Voget, S.
Leggewie, C.
Uesbeck, A.
Raasch, C.
Jaeger, K.-E.
Streit, W.R.

Prospecting for novel biocatalysts in a soil metagenome

Appl. Environ. Microbiol. 69, 6235-6242 (2003)

1946

Streit, W.R.
Entcheva, P.

Biotin in microbes, the genes involved in its biosynthesis, its biochemical role and perspectives for biotechnological production

App. Microbiol. Biotechnol. 61, 21-31 (2003)

1947

Heinz, E.
Streit, W.R.

Biotin limitation in Sinorhizobium meliloti strain 1021 alters transcription and translation

Appl. Environ. Microbiol. 69, 1206-1213 (2003)

1948

Behrens, S.

Periplasmic chaperones – preservers of subunit folding energy for organelle assembly

Cell, Preview, p. 556-557 (2003)

1949

Lodge, J.A.
Maier, T.
Liebl, W.
Hoffmann, V.
Sträter, N.

Crystal structure of Thermotoga maritima a-glucosidase AglA defines a new clan of NAD⁺-dependent glycosidase

J. Biol. Chem. 278, 19151-19158 (2003)

1950

Tzetkov, M.
Klopprogge, C.
Zelder, O.
Liebl, W.

Genetic dissection of trehalose biosynthesis in Corynebacterium glutamicum: inactivation of trehalose production leads to impaired growth and an altered cell wall lipid composition

Microbiol. 149, 1659-1673 (2003)

1951

Thiemann, V.
Antranikian, G.
Klenk, H.-P.
Vollstedt, A.
Freudl, R.
Jürgens, C.
Sterner, R.
Liebl, W.

Das thermoalkaliphile Bakterium Anaerobranca gottschalkii als Quelle stabiler Enzyme zur Herstellung hochwertiger Kohlenhydrate

Transkript 9, 90-93 (Sonderheft „Nachhaltige Biokatalyse) 2003

1952

Raasch, C.
Roujeinikova, A.
Meissner, H.
Rice, D.W.
Liebl, W.

Biochemical properties and structural features of the thermostable maltodextrin transglycosidases from Thermotoga maritima

Biologia 57/Suppl. 11: 101-108 (2002)

1953

Liebl, W.

Extremophile: Mikroorganismen unter Extrembedingungen

Georgia Augusta 1, 98-103 (2002)

1954

Mayer, F.

Cytoskeletons in prokaryotes

Cell Biol. Internat. 27, 429-438 (2003)

1955

Mayer, F.

Das bakterielle Cytoskelett - Ein aktuelles Problem der Zellbiologie der Prokaryoten

Naturwiss. Rundsch. 59, 595-605 (2003)

1956

Madkour, M.
Mayer, F.

The structural organization of the intact bacterial cellulosome as revealed by electron microscopy

1957

Schübbe, S.
Kube, M.
Scheffel, A.
Wawer, C.
Heyen, U.
Meyerdierks, A.
Madkour, M.H.
Mayer, F.
Reinhardt, R.
Schüler, D.

Characterization of a spontaneous nonmagnetic mutant of Magnetospirillum gryphiswaldense reveals a large deletion comprising a putative magnetosome island

J. Bacteriol. 185, 5779-5790 (2003)

1958

Wichmann, C.
Naumann, P.T.
Spangenberg, O.
Konrad, M.
Mayer, F.
Hoppert, M.

Liposomes for microcompartimentation of enzymes and their influence on catalytic activity

Biochem. Biophys. Res. Comm. 310, 1104-1110 (2003)

1959

Lingl, A.
Huber, H.
Stetter, K.O.
Mayer, F.
Kellermann, J.
Müller, V.

Isolation of a complete A₁A₀ATPsynthase comprising nine subunits from the hyperthermophile Methanococcus jannaschii

Extremophiles 7, 249-257 (2003)

1960

Gonzales, J.M.
Covert, J.S.
Whitman, W.B.
Henriksen, J.R.
Mayer, F.
Scharf, B.
Schmitt, R.
Buchan, A.
Fuhrman, J.A.
Keine, R.P.
Moran, M.A.

Silicibacter pomeroyi sp.nov. and Roseovarius nubinhibens sp.nov., DMSP demethylating bacteria from marine environments

Int. J. Syst. Evol. Microbiol. 53, 1261-1269 (2003)

1961

Brüggemann, H.
Bäumer, S.
Fricke, W.F.
Wiezer, A.
Liesegang, H.
Decker, I.
Herzberg, C.
Martinez-Arias, R.
Merkl, R.
Henne, A.
Gottschalk, G.

The genome sequence of Clostridium tetani, the causative agent of tetanus disease

Proc. Natl. Acad. Sci. USA. 100, 1316-1321 (2003)

1962

Yano, J.K.
Blasco, F.
Schmid, R.D.
Henne, A.
Poulos, T.L.

Preliminary characterization and crystal structure of a thermostable cytochrome P450 from Thermus thermophilus

J. Biol. Chem. 278, 608-616 (2003)

1963

Valle, M.
Gillet, R.
Kaur, S.
Henne, A.
Ramakrishnan, V.
Frank, J.

Visualizing tmRNA entry into a stalled ribosome

Science 300, 127-130 (2003)

1964

Droogmans, L.
Roovers, M.
Bujnicki, J.M.
Tricot, C.
Hartsch, T.
Stalon, V.
Grosjean, H.

Cloning and characterization of tRNA (m1A58) methyltransferase (TrmI) from Thermus thermophilus HB27, a protein required for cell growth at extreme temperatures

Nucleic Acids Res. 31, 2148-2156 (2003)

1965

Aono, S.
Hartsch, T.
Schulze-Gahmen, U.

Crystallization of a member of the recFOR DNA repair pathway, RecO, with and without bound oligonucleotide

Acta Crystallogr. D Biol. Crystallogr. 59, 576-579 (2003)

1966

Empadinhas, N.
Albuquerque, L.
Henne, A.
Santos, H.
Da Costa, M.S.

The bacterium Thermus thermophilus, like hyperthermophilic archaea, uses a two-step pathway for the synthesis of mannosylglycerate

Appl. Environ. Microbiol. 6, 3272-3279 (2003)

1967

Friedrich, A.
Rumszauer, J.
Henne, A.
Averhoff, B.

Pilin-like proteins in the extremely thermophilic bacterium Thermus thermophilus HB27: implication in competence for natural transformation and links to type IV pilus biogenesis

Appl. Environ. Microbiol. 69, 3695-3700 (2003)

1968

Pfluger, K.
Baumann, S.
Gottschalk, G.
Lin, W.
Santos, H.
Müller, V.

Lysine-2,3-aminomutase and beta-lysine acetyltransferase genes of methanogenic archaea are salt induced and are essential for the biosynthesis of N(varepsilon)-acetyl-beta-lysine and growth at high salinity

Appl. Environ. Microbiol. 69, 6047-6055 (2003)

1969

Klunker, D.
Haas, B.
Hirtreiter, A.
Figueiredo, L.
Naylor, D.J.
Pfeifer, G.
Müller, V.
Deppenmeier, U.
Gottschalk, G.
Hartl, F.U.
Hayer-Hartl, M.

Coexistence of group I and group II chaperonins in the archaeon Methanosarcina mazei

J. Biol. Chem. 278, 33256-33267 (2003)

1970

Dobrindt, U.
Agerer, F.
Michaelis, K.
Janka, A.
Buchrieser, C.
Samuelson, M.
Svanborg, C.
Gottschalk, G.
Karch, H.
Hacker, J.

Analysis of genome plasticity in pathogenic and commensal Escherichia coli isolates by use of DNA arrays

J. Bacteriol. 185, 1831-1840 (2003)

1971

Stecker, C.
Johann, A.
Herzberg, C.
Averhoff, B.
Gottschalk, G.

Complete nucleotide sequence and genetic organization of the 210-kilobase linear plasmid of Rhodococcus erythropolis BD2

J. Bacteriol. 185, 5269-5274 (2003)

1972

Wiezer, A.
Merkl, R.

SecureBLAST

In Silico Biology 3, 0033 (2003)

1973

Tech, M.
Merkl, R.

YACOP: enhanced gene prediction obtained by a combination of existing methods

In Silico Biology 3, 0037 (2003)

1974

Brüggemann, H.
Bäumer, S.
Gottschalk, G.
Hartsch, T.

Clostridium tetani collagenase and uses thereof

Patent 02028812.2 (2003)

1975

Merkl, R.

A survey of codon and amino acid frequency bias in microbial genomes focusing on translational efficiency

J. Mol. Evol. 57, 453-466 (2003)

1976

Merkl, R.

Einführung in die Bioinformatik

Kurs 1738 der FernUniversität Hagen (2003)

1977

Valerius, O.
Brendel, C.
Wagner, C.
Krappmann, S.
Thoma, F.
Braus, G.H.

Nucleosome position-dependent and –independent activation of HIS7 expression in Saccharomyces cerevisiae by different transcriptional activators

Eukaryotic Cell 2, 876-885 (2003)

1978

Braus, G.H.
Grundmann, O.
Brückner, S.
Mösch, H.-U.

Amino acid starvation and Gcn4p regulate adhesive growth and FLO11 gene expression in Saccharomyces cerevisiae

Mol. Biol. of the Cell 14, 4272-4284 (2003)

1979

Allen, G.S.
Steinhauer, K.
Hillen, W.
Stülke, J.
Brennan, R.G.

Crystal structure of HPr kinase/phosphatase from Mycoplasma pneumoniae

J. Mol. Biol. 326, 1203-1217 (2003)

1980

Meinken, C.
Blencke, H.-M.
Ludwig, H.
Stülke, J.

Expression of the glycolytic gapA operon in Bacillus subtilis: differential syntheses of proteins encoded by the operon

Microbiol. 149, 751-761 (2003)

1981

Ludwig, H.
Blencke, H.-M.
Schmalisch, M.
Detsch, C.
Merzbacher, M.
Stülke, J.

Positive regulation of gene expression by the catabolite control protein CcpA in Bacillus subtilis. In: Regulatory Networks in Prokaryotes. (Dürre, P., and Friedrich, B., eds.), pp. 181-186, Norfolk: Horizon Scientific Press (2003)

1982

Blencke, H.-M.
Homuth, G.
Ludwig, H.
Mäder, U.
Hecker, M.
Stülke, J.

Transcriptional profiling of gene expression in response to glucose in Bacillus subtilis: regulation of the central metabolic pathways.

Metab. Engn. 5, 133-149 (2003)

1983

Wacker, I.
Ludwig, H.
Reif, I.
Blencke, H.-M.
Detsch, C.
Stülke, J.

The regulatory link between carbon and nitrogen metabolism in Bacillus subtilis: regulation of the gltAB operon by the catabolite control protein CcpA

Microbiol. 149, 3001-3009 (2003)

1984

Detsch, C.
Stülke, J.

Ammonium utilization in Bacillus subtilis: transport and regulatory functions of NrgA and NrgB

Microbiol. 149, 3289-3297 (2003)

1985

Schmalisch, M.
Bachem, S.
Stülke, J.

Control of the Bacillus subtilis antiterminator protein GlcT by phosphorylation: Elucidation of the phosphorylation chain leading to inactivation of GlcT.

J. Biol. Chem. 278, 51108-51115 (2003)

1986

Busch, S.
Bode, H.B.
Brakhage, A.A.
Braus, G.H.

Impact of the cross-pathway control on the regulation of lysine and penicillin biosynthesis in Aspergillus nidulans

Curr. Genet. 42, 209-219 (2003)

1987

Fuhrmann, S.
Ferner, M.
Jeffke, T.
Henne, A.
Gottschalk, G.
Meyer, O.

Complete nucleotide sequence of the circular megaplasmid pHCG3 of Oligotropha carboxidovorans: function in the chemolithoautotrophic utilization of CO, H₂ and CO₂

Gene 322, 67-75 (2003)

1988

Stanke, M.
Waack, S.

Gene prediction with a hidden markov model and new intron submodel

Bioinformatics 19, ii215-ii225 (2003)

1989

Sammeth, M.
Morgenstern, B.
Stoye, J.

Divide-and-conquer multiple alignment with segment-based constraints

Bioinformatics 19, ii189-ii195 (2003)

1990

Taher, L.
Rinner, O.
Gargh, S.
Sczyrba, A.
Brudno, M.
Batzoglou, S.
Morgenstern, B.

AGenDA: homology-based gene prediction

Bioinformatics 19, 1575-1577 (2003)

1991

Morgenstern, B.
Goel, S.
Sczyrba, A.
Dress, A.

AltAVisT: comparing alternative multiple alignments

Bioinformatics 19, 425-426 (2003)

1992

Taher, L.
Morgenstern, B.
Meinicke, P.

The importance of window length in splice site prediction

In: Proceedings of the European Conference on Computational Biology (C. Christophe, H.-P. Lenhof, M.-F. Sagot, eds.), pp. 469-470 (2003)

1993

Meinicke, P.
Twellmann, T.
Ritter, H.

Discriminative densities from maximum contrast estimation

In: Advances in Neural Information Processing Systems 15 (S. Becker, S. Thrun, K. Obermayer, eds.), pp. 985-992, MIT Press, 2003)

1994

Meinicke, P.
Kaper, M.
Hoppe, F.
Heumann, M.
Ritter, H.

Improving transfer rates in brain computer interfacing: a case study

In: Advances in Neural Information Processing Systems 15 (S. Becker, S. Thrun, K. Obermayer, eds.), pp. 1107-1114, MIT Press, 2003

1995

Brudno, M.
Chapman, M.
Göttgens, B.
Batzoglou, S.
Morgenstern, B.

Fast and sensitive multiple alignment of large genomic sequences

BMC Bioinformatics 4, 66 (2003)