Publications (2005)

2083

Arnórsdóttir, J.
Kristjansson, M.M.
Ficner, R.

Crystal structure of a subtilisin-like serine proteinase from a psychrotrophic Vibrio species reveals structural aspects of cold adaptation
FEBS J. 272, 832-845 (2005)

2084

Stummeyer, K.
Dickmanns, A.
Mühlenhoff, M.
Gerardy-Schahn, R.
Ficner, R.

Crystal structure of the polysialic acid-degrading endosialidase of bacteriophage K1F
Nature Struct. & Mol. Biol. 12, 90-96 (2005)

2085

Ehlers, C.
Weidenbach, K.
Veit, K.
Forchhammer, K.
Schmitz, R.A.

Unique mechanistic features of post-translational regulation of glutamine synthetase activity in Methanosarcina mazei strain Gö1 in response to nitrogen availability
Mol. Microbiol. 55, 1841-1854 (2005)

2086

Krappmann, S.
Braus, G.H.

Nitrogen metabolism of Aspergillus and its role in pathogenicity
Medical Mycol. Suppl. I, Vol. 43, S31-S40 (2005)

2087

Krappmann, S.
Bayram, O.
Braus, G.H.

Deletion and allelic exchange of the Aspergillus fumigatus veA locus via a novel recyclable marker module
Eukaryotic Cell 4, 1298-1307 (2005)

2088

Daniel, R.

The metagenomics of soil
Nature Rev. 3, 470-478 (2005)

2089

Andres, S.
Wiezer, A.
Bendfeldt, H.
Waschkowitz, T.
Toeche-Mittler, C.
Daniel, R.

Insights into the genome of the enteric bacterium Escherichia blattae: Cobalamin (B₁₂) biosynthesis, B₁₂-dependent reactions, and inactivation of the gene region encoding B₁₂-dependent glycerol dehydratase by a new Mu-like prophage
J. Mol. Microbiol. Biotechnol. 8, 150-168 (2004)

2090

Kleinschmidt, M.
Grundmann, O.
Blüthgen, N.
Mösch, H.-U.
Braus, G.H.

Transcriptional profiling of Saccharomyces cerevisiae cells under adhesion-inducing conditions
Mol. Genet. Genomics 273, 382-393 (2005)

2091

Helmstaedt, K.
Strittmatter, A.
Lipscomb, W.N.
Braus, G.H.

Evolution of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase-encoding genes in the yeast Saccharomyces cerevisiae
Proc. Natl. Acad. Sci. USA 102, 9784-9789 (2005)

2092

Riester, D.
Wirsching, F.
Salinas, G.
Keller, M.
Gebinoga, M
Kamphausen, S.
et al.
Schwienhorst, A.

Thrombin inhibitors identified by computer-assisted multiparamater design
Proc. Natl. Acad. Sci. USA 102, 8597-8602 (2005)

2093

Draht, O.

CsnA dependent development and regulation of amino acid biosynthesis of the filamentous ascomycete Aspergillus nidulans
Dissertation, Univers. Göttingen, 2005

2094

Fischer, C.
(ehem. Wagner)

Regulation of Flo11p-dependent adhesion in Saccharomyces cerevisiae
Dissertation, Univers. Göttingen, 2005

2095

Grzeganek, A
(ehem. Pfeil)

The tyrosine regulated DAHP synthase and the biosynthetic pathway of aromatic amino acids in Saccharomyces cerevisiae
Dissertation, Univers. Göttingen, 2005

2096

Hennecke, G.

Zur Substratspezifität und Substratbindung des periplasmatischen Chaperons SurA aus Escherichia coli
Dissertation, Univers. Göttingen, 2005

2097

Höfle, C.

Untersuchungen zur genetischen Regulation der CO₂-Assimilation in Ralstonia spp.
Dissertation, Univers. Göttingen, 2005

2098

Kleinschmidt, M.

Regulation of gene expression and adhesion in Saccharomyces cerevisiae
Dissertation, Univers. Göttingen, 2005

2099

Hovey, R.
Lentes, S.
Ehrenreich, A.
Salmon, K.
Saba, K.
Gottschalk, G.
Gunsalus, R.P.
Deppenmeier, U.

DNA microarray analysis of Methanosarcina mazei Gö1 reveals adaptation to different methanogenic substrates
Mol. Genet. Genomics 273, 225-239 (2005)

2100

Prust, C.
Hoffmeister, M.
Liesegang, H.
Wiezer, A.
Fricke, W.F.
Ehrenreich, A.
Gottschalk, G.
Deppenmeier, U.

Complete genome sequence of the acetic acid bacterium Gluconobacter oxydans
Nat. Biotechnol. 23 (2), 195-200 (2005)

2101

Görke, B.
Reinhardt, J.
Rak, B.

Activity of Lac repressor anchored to the Escherichia coli inner membrane
Nucl. Acids Res. 33, 2504-2511 (2005)

2102

Görke, B.
Foulquier, E.
Galinier, A.

YvcK of Bacillus subtilis is required for a normal cell shape and for growth on Krebs cycle intermediates and substrates of the pentose phosphate pathway
Microbiol. 151, 3777-3791 (2005)

2103

Harris, S.D.
Read, N.D.
Roberson, R.W.
Shaw, B.
Seiler, S.
Plamann, M.
Momany, M.

Polarisome meets spitzenkörper: microscopy, genetics, and genomics converge
Eukaryotic Cell 4, 225-229 (2005)

2104

Hennecke, F.
Müller, A.
Meister, R.
Strelow, A.
Behrens, S.

A ToxR-based two-hybrid system for the detection of periplasmic and cytoplasmic protein-protein interactions in Escherichia coli: minimal requirements for specific DNA binding and transcriptional activation
Protein Engineering, Design & Selection 18, 477-486 (2005)

2105

Hennecke, G.
Nolte, J.
Volkmer-Engert, R.
Schneider-Mergener, J.
Behrens, S.

The periplasmic chaperone SurA exploits two features characteristic of integral outer membrane proteins for selective substrate recognition
J. Biol. Chem. 280, 23540-23548 (2005)

2106

Prkash, R.
Krejci, L
Van Komen, S.
Schürer, A.
Kramer, W.
Sung, P.

Saccharomyces cerevisiae MPH1 gene, required for homologous recombination-mediated mutation avoidance, encodes a 3’ to 5’ DNA helicase
J. Biol. Chem. 280, 7854-7860 (2005)

2107

Nielsen, T.K.
Hildmann, C.
Dickmanns, A.
Schwienhorst, A.
Ficner, R.

Crystal structure of a bacterial class 2 histone deacetylase homologue
J. Mol. Biol. 354, 107-120 (2005)

2108

Andrade, S.L.A.
Dickmanns, A.
Ficner, R.
Einsle, O.

Crystal structure of the archaeal ammonium transporter Amt-1 from archaeglobus
Proc. Natl. Acad. Sci. USA 102, 14994-14999 (2005)

2109

Andrade, S.L.A.
Dickmanns, A.
Ficner, R.
Einsle, O.

Expression, purification and crystallization of the ammonium transporter Amt-1 from archaeoglobus fulgidus
Acta Cryst. F61, 861-863 (2005)

2110

Heitmann, D.
Einsle, O.

Structural and biochemical characterization of DHC2, a novel diheme cytochrome c from Geobacter sulfurreducens
Biochem. 44, 12411-12419 (2005)

2111

Rees, D.C.
Tezcan, F.A.
Haynes, C.A.
Walton, M.Y.
Andrade, S.L.
Einsle, O.
Howard, J.B.

Structural basis of nitrogen fixation
Philos. Transact. A Math. Phys. Eng. Sci. 363, 971-984 (2005)

2112

Andrade, S.L.
Cruz, F.
Drennan, C.L.
Ramakrishnan, V.
Rees, D.C.
Ferry, J.G.
Einsle, O.

Structures of the iron-sulfur flavoproteins from Methanosarcina thermophila and Archaeoglobus fulgidus
J. Bacteriol. 187, 3848-3854 (2005)    

2113

Einsle, O.
Niessen, H.
Abt, D.J.
Seiffert, G.
Schink, B.
Huber, R.
Messerschmidt, A.
Kroneck, P.M.H.

Crystallization and preliminary X-ray analysis of the tungsten-dependent acetylene hydratase from Pelobacter acetylenicus
Acta Cryst. F61, 299-301 (2005)

2114

Corbett, M.C.
Tezcan, F.A.
Einsle, O.
Walton, M.Y.
Rees, D.C.
Latimer, M.J.
Hedman, B.
Hodgson, K.O.

Mo K and L-edge X-ray absorption spectroscopic study of the ADP-AlF4-stabilized nitrogenase complex: Comparison with MoFe protein in solution and single crystal
J. Synchrotron Rad. 12, 28-34 (2005)

2115

Hempel, R.
Schwienhorst, A.

Elemente des bakteriellen Zytoskeletts
BioSpektrum 6/05, 729-731 (2005)

2116

Meyer-Almes, F.J.
Schwienhorst, A.

Neue Ansätze im Wirkstoffdesign

2117

Schuster S. C., Gottschalk G.

Section Genomics: Microbial genomics in its second decade
Curr. Opinion Microbiol. 8, 561-563 (2005)

2118

Fricke, W. F.

Entschlüsselung der Genome von Ralstonia eutropha H16 und Methanosphaera stadtmanae und vergleichende Untersuchungen zu Anpassungen der Genomorganisation
Dissertation, Univ. Göttingen, 2005

2119

Brzuszkiewicz, E.

Genome Sequence of Escherichia coli 536: insights into uropathogenicity through comparison with genomes of Escherichia coli MG1655, CFT073, and EDL933
Dissertation, Univ. Göttingen, 2005

2120

Wiezer A.,
Merkl, R.

A comparative categorization of gene flux in diverse microbial species
Genomics 86 (4), 462-475 (2005)

2121

Gottschalk, G.

Die molekularen Biowissenschaften im Spannungsfeld zwischen Fortschritt und Verantwortung.
In: Verantwortung der Wissenschaft (Starck, C., ed.), pp. 1-21, Tübingen: Mohr Siebeck (2005)

2122

Strasser, A.
Dickmanns, A.
Lührmann, R.
Ficner, R.

Structural basis for m3G-cap mediated nuclear import of spliceosomal UsnRNPs by snurportin1
EMBO J. 24, 2235-2243 (2005)

2123

Dierks, T.
Dickmanns, A. Preusser-Kunze, A. Schmidt, B.
Mariappan, M.von Figura, K.
Ficner, R.
Rudolph, M.G.

Molecular basis for multiple sulfatase deficiency and catalytic mechanism for formylglycine generation of the human formylglycine generating enzyme
Cell 121, 541-552 (2005)

2124

Dickmanns, A.
Schmidt, B.
Rudolph, M.G.
Mariappan, M.
Dierks, T.
von Figura, K.
Ficner, R.

Crystal structure of human pFGE, the paralogue of the Ca-formylglycine generating enzyme
J. Biol. Chem. 280, 15180-15187 (2005)

2125

Dickmanns, A.
Ficner, R.

Role of the 5’-cap in the biogenesis of spliceosomal snRNPs
Topics in Current Genetics 12, 179-204 (2005)

2126

Roeser, D.
Dickmanns, A.
Gasow, K.
Rudolph, M.G.

De novo calcium/sulfur SAD phasing of the human formylglycine generating enzyme using in-house data
Acta Cryst. D61, 1057-1066 (2005)

2127

Arnósdóttir, J.

Chrystallographic studies on a cold adapted subtilase and proteins involved in mRNA processing
Dissertation, Univers. Göttingen, 2005

2128

Gouloudis, C.

Expression, Charakterisierung und Kristallisation der spleißosomalen Proteine SMNrp, U4/U6-60k und U4/U6-90k
Dissertation, Univers. Göttingen, 2005

2129

Nielsen, T.K.

Crystal structure of a human U5 snRNP specific binary complex and crystal structure of a histone deacetylase-like bacterial amidohydrolase
Dissertation Univers. Göttingen, 2005

2130

Strasser, A.

2131

Schwarz, S.
Waschkowitz, T.
Daniel, R.

Enhancement of gene detection frequencies by combining DNA-based stable-isotope probing with the construction of metagenomic DNA libraries
In: World J. Microbiol. & Biotechnol., DOI 10./1007
Springer Verlag 2005

2132

Angelov, A.

Genome sequence analysis and characterization of recombinant enzymes from the thermoacidophilic archaeon Picrophilus torridus
Dissertation, Univers. Göttingen, 2004

2133

Angelov, A.
Fütterer, O.
Valerius, O.
Braus, G.H.
Liebl, W.

Properties of the recombinant glucose/galactose dehydrogenase from the extreme thermoacidophile, Picrophilus torridus
FEBS J. 272,1054-1062 (2005)

2134

Ballschmiter, M.
Armbrecht, M.
Ivanova, K.
Liebl, W.

AmyA, an a-amylase with b-cyclodextrin-forming activity, and AmyB from the thermoalkaliphile Anaerobranca gottschalkii: two a-amylases adapted to their different cellular localization
Appl. Environ. Microbiol. 71, 3709-3715 (2005)

2135

Liebl, W.

Corynebacterium Taxonomy.
In: Handbook of Corynebacterium glutamicum (L. Eggeling and M. Bott, ed.), CRC Press, pp. 9-34 (2005)

2136

Liebl, W.
Antranikian, G.

Die Sequenzierung und funktionelle Analyse des Genoms des säure- und hitzebeständigen Archaeons Picrophilus torridus liefert die Information für neuartige Biokatalysatoren
GenomXPress Sonderausgabe September 2005

2137

Ballschmiter, M.

Vergleichende biochemische und strukturelle Untersuchung thermophiler a-Amylasen
Dissertation, Univers. Göttingen, 2005

2138

Kleine, J.

Vergleichende Untersuchung von Deletionsderivaten der Xylanase XynA des hyperthermophilen Bakteriums Thermotoga maritima
Dissertation, Univers. Göttingen, 2005

2139

Hoffmann, V.

Biochemische und mechanistische Charakterisierung von Enzymen der Glykosidhydrolase-Familie 4
Dissertation, Univers. Göttingen, 2005

2140

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
Nature 438 (7071), 1105-1115 (2005)

2141

Hames, C.
Halbedel, S.
Schilling, O.
Stülke, J.

MMR: A method for the simultaneous introduction of multiple mutations into the glpK gene of Mycoplasma pneumoniae
Appl. Env. Microbiol. 71, 4097-4100 (2005)

2142

Halbedel, S.
Stülke, J.

Dual phosphorylation of Mycoplasma pneumoniae HPr by Enzyme I and HPr kinase suggests an extended phosphoryl group susceptibility of HPr
FEMS Microbiol. Lett. 247, 193-198 (2005)

2143

Pané-Farré, J.
Lewis, R.J.
Stülke, J.

The RsbRST stress module in bacteria: A signalling system that may interact with different output modules

2144

Hülpers, A.
Müller, C.
Siegesmund, S.
Hoppert, M.
Weiss, T.
Török, A.

Kalksteinverwitterung: Die Zitadelle und das Parlaments-gebäude in Budapest
In: Stein – Zerfall und Konservierung (S. Siegesmund, R. Snethlage, M. Auras, Hrsg.), pp. 201-209, Edition Leipzig, Leipzig, 2005

2145

Mayer, F.
Wheatley, D.
Hoppert, M.

Some properties of interfacial water: determi­nants for cell architecture and function.

2146

Hoppert, M.
König, S.
Hegermann, J.

Microalgae on building stone
Zeitschr. Deut. Geol. Ges. 156, 93-101 (2005)

2147

Ehrenreich, A.
Gottschalk, G.
Brüggemann, H.

Genomics of pathogenic clostridia and bacilli
In: Pathogenomics: Genome analysis of pathogenic microbes (J. Hacker, U. Dobrindt, eds.), Weinheim, Wiley-VCH Verlag (2005/06)

2148

Morgenstern, B.
Werner, N.
Prohaska, S.J.
Steinkamp, R.
Schneider, I.
Subramanian, A.R.
Stadler, P.F.
Weyer-Menkhoff, J.

2149

Meinicke, P.
Klanke, S.
Memisevic, R.
Ritter, H.

Principal Surfaces from Umsupervised Kernel Regression
IEEE Transactions on Pattern Analysis and Machine Intelligence 27, 1379-1391 (2005)

2150

Pöhler, D.
Werner, N.
Steinkamp, R.
Morgenstern, B.

Multiple Alignment of Genomic Sequences using CHAOS, DIALIGN and ABC
Nucleic Acids Res. 33, W532-W534 (2005)

2151

Subramanian, A.R.
Weyer-Menkhoff, J.Kaufmann, M.Morgenstern, B.

DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
BMC Bioinformatics 6, 66 (2005)

2152

Stanke, M.
Morgenstern, B.

AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
Nucleic Acids Res. 33, W465-W467 (2005)

2153

Weyer-Menkhoff, J.
Devauchelle, C.
Grossmann, A.
Grünewald, S.

Integer linear programming as a tool for constructing trees from quartet data
Computational Biology and Chemistry 29, 196-203 (2005)

2154

Zhang, M.
Wilbe, K.
Wolfe, N.D.
Gaschen, B.
Carr, J.K.
Leitner, T.

HIV-1 CRF13_cpx revisited: identification of a new sequence from Cameroon and signal for sub-subtype J2
AIDS Research and Human Retroviruses 21, 955-960 (2005)

2155

Tech, M.
Pfeifer, N.
Morgenstern, B.
Meinicke, P.

TICO: a tool for improving predictions of prokaryotic translation initation sites
Bioinformatics 21, 3568-3569 (2005)

2156

Zhang, M.
Schultz, A.-K.
Morgenstern, B.
Stanke, M.
Korber, B.
Leitner, T.

Greater HIV Genome Diversities Inferred From Re-subtyping of HIV Database Sequences
Proc. German Conference on Bioinformatics (Discovery Notes, Poster Abstracts), 5-7 (2005)

2157

Stanke, M.
Morgenstern, B.

AUGUSTUS: Genvorhersage in Eukaryoten mit Hidden-Markov-Modellen und vergleichender Sequenzanalyse
BIOforum 9, 45-47 (2005)

2158

Stanke, M.
Schöffmann, O.
Morgenstern, B.
Waack, S.

Gene prediction in eukaryotes with a Generalized Hidden Markov Model using EST and protein sequence information BMC
Bioinformatics (2005, in press)

Gene structure prediction by genomic sequence alignment.
Genetics, Genomics, Proteomics and Bioinformatics, John Wiley & Sons, 2005